Scaffold Ga0182001_10019178

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182001_10019178

Scaffold Ga0182001_10019178

Overview

Basic Information
Taxon OID	3300014488 Open in IMG/M
Scaffold ID	Ga0182001_10019178 Open in IMG/M
Source Dataset Name	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1580
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Mexico: San Luis Potosi
Coordinates	Lat. (^o)	21.766	Long. (^o)	-100.163	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001016	Metagenome	805	Y
F002864	Metagenome / Metatranscriptome	525	Y
F059701	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182001_100191781	F059701	AGGAG	MSEKALGMLRHMQKQIFGHPAPYVVVRGAAVSIGVDPSGSECDGLVDELLEAGYIQTYPSPS
Ga0182001_100191782	F001016	AGG	MGPQDPKDVTRDTARDLSGLVGELAALKGDATHWLTDPEYATLRHRLEAAHAATEAALVEARRRVRLNEKQGE*
Ga0182001_100191783	F002864	AGGA	VSGQEPVRIPKEVLEELESVGRYTRAEVLDIPTVRHVAMETHKPALVVWIDKHEQEYGLGLLNGFLAED*

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