NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182001_10048399

Scaffold Ga0182001_10048399


Overview

Basic Information
Taxon OID3300014488 Open in IMG/M
Scaffold IDGa0182001_10048399 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - San Felipe (SF) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: San Luis Potosi
CoordinatesLat. (o)21.766Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021723Metagenome / Metatranscriptome217Y
F022153Metagenome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0182001_100483991F022153N/AGRPARDSDTERTVRVADPEGSTKAFGKLEQAIGELVGAGDVKERLKVATMTLVPIFPDDFPAGHLRDEYADIRQALAWPPPEEGSRQGLLQSNLEAMTAEEAGELAKSLFSLYTSSAEAVYGGLHGRGDLRQG*
Ga0182001_100483992F021723GGAGGVPDANELKLLASRQEQAFHEKFGYPSREVPDLWVGKLVALNMLGGRGAVSGMLEAIRDDGFVISVEDRVVFIPRSAVLQMELYETSERG*
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