Scaffold Ga0182018

Basic Information
Taxon OID	3300014489 Open in IMG/M
Scaffold ID	Ga0182018_10000163 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014489 Open in IMG/M

Scaffold ID

Ga0182018_10000163 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	85839
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (60.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

85839

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (60.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000885	Metagenome / Metatranscriptome	849	Y
F002750	Metagenome / Metatranscriptome	533	Y
F020959	Metagenome	221	Y
F054194	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_100001631	F020959	GGA	VAVAGTALNNWKLKAFTGGGTELTAVAYSTTFVATDVVQLTITARKLQ*
Ga0182018_1000016316	F000188	N/A	VYRSAREVLDTKRGISAMNCKDAGKYLWRPDFRPRLSEWVADFSLAGQKALEGPDFASRLVLFRMFYLGMAPYDRARKFLGLSEMGWVNWTEEIRRRVGEELLSRGMFPPRKYFQEAA*
Ga0182018_100001632	F000696	N/A	LRLARFTGARQKPQGANPVALRYMRRVSALTAKEKPMPVVGSSAYNTAGQIISLVRSLLNDAAGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDVLLVVTAVTETDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNLSTDDFTEMVDLSQHGGLPSRAQDVTLSVWEWRADGIYFLGATQDTQIRLRYFKAYPDFTDSTSPVLIRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVVTAVRREQQTQRRRRPYSSRGGYTPF*
Ga0182018_100001634	F002750	N/A	LLNSGYVGLIEAELVRLRAENRALTNSLLGTAGFPPVDYPDPPKSAPLPRVRKRSWHQLQAHRESDAARDIETNRDERVYGPVSPI*
Ga0182018_100001635	F054194	AGGAG	MPVRNRRLKISTTIAPENRAFLKSLIKRGSAANFAEAVDSLIEEARRAENRKRLDDATAAFYASLSGDALKQEQELELAVGSAASRVDFDAE*
Ga0182018_100001638	F000885	GGAG	MTTTTTTTSNAHLEFIGMIVEIAGVAAVVGGLVLSLHHWPAAAALIGGGTAYFIGKKLRAM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182018_10000163

Overview

Ecosystem & Geography

Associated Families

Sequences