NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182018_10000896

Scaffold Ga0182018_10000896


Overview

Basic Information
Taxon OID3300014489 Open in IMG/M
Scaffold IDGa0182018_10000896 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36691
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (69.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F007294Metagenome / Metatranscriptome353Y
F010139Metagenome / Metatranscriptome308Y
F020297Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0182018_1000089614F007294GGAMALTVQQLQLNLDAVTQAIGGPTLKVRFPDGREVTYRSTDELLKAKATIEEDIRKTSGQTGSRVRFAQHQRGDGPTGPTLDDRW*
Ga0182018_100008962F000451N/AMPRFQTVIRRARFVYSPYTATEMQSFAQVLADSIRMRIQSGRNIYDQAAAPLKAGQSGRRGYPDYKAARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRRMTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA*
Ga0182018_1000089623F020297GGAVAASKGRLVWTRKDKSMNFLQIIQTILSVAPSGIQLTQEVVALVQAIEAAFTAGQTPATHQQAVASALGAHLAKTA*
Ga0182018_100008967F010139AGGMADLVFMKSPQGDEIKEVEATAEALSPFMSTGWHQVPAPAAEQKPAVVAEEEKQHGEHQ*
Ga0182018_100008968F002448N/AMTNPKTILAEWVTALQALPNLVDALGGDASYIQFYTENTTVFGQPTQNNIRLAILSMPPGSIMIAWQGTGPGRLGNALVFVHDFSLYLRAPEEPDVGYEDLFNWIVNDVPAGSSLRMLHTAVDPNCEPMDFYLPSARRNTVVISPDGATFEYFEVPVRLIESYNP*
Ga0182018_100008969F007212N/AMSDWPTIDAAANAVMQQTFGEPVVYQSAQAGAAVGDPVTITAIRHARVREESGALANVEEISVNPPDLASFPQRGDWVTAWGSQFVVTTVRQPDPYGLVELSLMARAGQTPND*
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