NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182018_10097463

Scaffold Ga0182018_10097463


Overview

Basic Information
Taxon OID3300014489 Open in IMG/M
Scaffold IDGa0182018_10097463 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1726
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0182018_100974631F042119GAGMETIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYHDKSGSAERAEEARNDPNGFYDRMTVKHGGQQ
Ga0182018_100974632F003764GAGMQIQLDSPYAHDENPAALLAGAEIEAAHLSRSLKIVRLWNQSSALPQSRHDEMIEEEQRLANLYVAIIFEIGSAFGIEQADELKVHIEAACILDDWECPPAEQGFLFPIPNYSATEASPATARK*
Ga0182018_100974633F004301GGAGMTTMQFSLFDVRPAAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQQASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ*
Ga0182018_100974634F017951N/ARHDVHQASREPYPGTETTMAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPSSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESFQ*
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