Basic Information | |
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Taxon OID | 3300014490 Open in IMG/M |
Scaffold ID | Ga0182010_10001559 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12026 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000780 | Metagenome / Metatranscriptome | 895 | Y |
F008261 | Metagenome / Metatranscriptome | 336 | Y |
F021136 | Metagenome / Metatranscriptome | 220 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182010_1000155910 | F000780 | GGCGG | MDSPTESAKAKIGAKLPYRSGHLMCRTPLWGVAGFLGCAYFAWISFSHVTRHEYEWPHDAWTTATYIVWILLLAGLALDTRCLRERLFFGVLVVNFVVGCGLTLWRNVPPADVRTARIGTGALWGLAALMSLTTLERAVDSRRNS* |
Ga0182010_1000155912 | F021136 | N/A | HILLLLLGLGIASRAIPTQLVSNMLGYLHKTIGITTPSAQQVRMVALIWIGSTVIIVDGCILLLLFIASVSNSG* |
Ga0182010_100015594 | F008261 | GGAG | MKLWHLCYAALGIAVARWVFKRQPMQVTDPISRFRASGLL* |
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