NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182010_10511718

Scaffold Ga0182010_10511718


Overview

Basic Information
Taxon OID3300014490 Open in IMG/M
Scaffold IDGa0182010_10511718 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010139Metagenome / Metatranscriptome308Y
F025426Metagenome201Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0182010_105117181F025426N/AILIVWQGSDPGRLGNAQVYTHAFSLFLRAPEIDDVGYEDICAWIINDYPAKTVNDVVVVSPIPMLHTQIDPNCEPMDFLLPGSRRNTAVISADGATFEYFEVPVRLIESYNP*
Ga0182010_105117182F010139GGAMEMADLVHMASPEGEVKEVEATAEALSPLLSKGWTQVPAPAGHKPAVPAEEEK*
Ga0182010_105117183F070324AGGAMANINELMEGWGFGKQTAIGAANLVAAMWRHTNLNTK
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