NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182014_10000003

Scaffold Ga0182014_10000003


Overview

Basic Information
Taxon OID3300014491 Open in IMG/M
Scaffold IDGa0182014_10000003 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)205948
Total Scaffold Genes177 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)122 (68.93%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000873Metagenome / Metatranscriptome851Y
F004508Metagenome / Metatranscriptome435Y
F009619Metagenome / Metatranscriptome315Y
F016551Metagenome / Metatranscriptome246Y
F055952Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0182014_10000003124F000873AGGGGGMKDIHEVLRRKQAQYTQLGKQIEMLQEAAEKLREVAPLLAENESEDDTAVLAEVEDDNNTMAAKAGAQSASTAKPGRSATPRWP*
Ga0182014_1000000315F004508AGGAGMRLVRPVLAIAIGIILLSAWAVAGQDQMGVADVYKVTFSEKVRVADTLLPSGNYEIRHVMEGADHIMVFRQVGVKKPAEVRAKCTLVPLPEKALETEKHFELNAANERVLHELIFKGDRSKHVF*
Ga0182014_10000003151F055952AGGAMRGSFLSFSYPSSIMLVGLLVLSTRFLWAQRTLPLENIPIQVLETPAPFARVSEVQTPLHLTYRRLPLTFERNQGQTDSRMKFFPHYPGYYRPPITTNAALYPATRTAESWRKLWGKENYLIVRAPSRWRTFALAYGKIPRETTCCFGDLEHYGHRIPWAGSTILRVLQQAKAHPHVTRVLTVLEPQF*
Ga0182014_1000000375F009619AGCAGLGHRCDQNHITIFNNFAKLHSYMREFSILTNRKRAVVALVHSIIFLLIAFRQMIAATPAAGIWVPATVPTGAWILCGIFTVASAILLWLFAISRGWTEKLYFGMCTVSASSGLLRTTFGDHTFHAGLYIRFVMLISAVLVGLFIVRIHSAAPPIPETPDPVL*
Ga0182014_1000000381F016551GGAMSIQEASAERFAQLFHQYQHALAKDFNGASSVHSTDAWADVPPSGKSLMVAAARLALLEVERLPSERQTRRYFAKPGEAEWGC*
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