NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182014_10001223

Scaffold Ga0182014_10001223


Overview

Basic Information
Taxon OID3300014491 Open in IMG/M
Scaffold IDGa0182014_10001223 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34701
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (75.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013438Metagenome / Metatranscriptome271Y
F027769Metagenome193Y
F039020Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0182014_1000122313F027769GGAGMGAATLIGLVVTLLQSILASAQVGGMSPEIIAEIEAAVAKLLAVQGTPVTYAQLEGLRVTTKW*
Ga0182014_1000122320F039020AGAAGGMTGISGCAAARATDSLLRSLGGTEVVMLFAAAGMPGDAVAELGLVDPGVEQAAIAPVVVRELTTESNGPRRRIELLAGRSAMAPQVSQRNVASADVLFETALGIVYQGDMFHIEGFVVERFGGVAYLYRVLAVA*
Ga0182014_100012237F013438GAGGMHRLYQWLTQRASSFRSDTSDGGTSRTVRTEVTVERQGMTLLVGGVAAGFDNCPLCGQKLAPAQAEQARLRLQQDSTAQTDLPVDGTSP*
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