NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182014_10004273

Scaffold Ga0182014_10004273


Overview

Basic Information
Taxon OID3300014491 Open in IMG/M
Scaffold IDGa0182014_10004273 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16502
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013725Metagenome / Metatranscriptome269Y
F097175Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0182014_100042738F097175N/AMKTYHILIGNCEELLSDFFEALFREVCEGNAVLQSTRTRRVSEFVRQGCETDFDLVIQVPHNLFPAATAPTPMDFIGEGIRAIRTIKSEHPVPVIAMVAPEERTRYEPLLLEAGADCVLELPFEGDELSSAVARLLKLPSRLEHLQSARWFFAGVLRRGSNV*
Ga0182014_100042739F013725N/AMKIKSHNRRPLAKGQIWKTQAADIEIVALGKKLIHYRITKQFGLKRVSAQISGIEAMANYLETNEARLVKGPSTN*
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