NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182014_10006979

Scaffold Ga0182014_10006979


Overview

Basic Information
Taxon OID3300014491 Open in IMG/M
Scaffold IDGa0182014_10006979 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11969
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F006278Metagenome / Metatranscriptome377Y
F017965Metagenome / Metatranscriptome237Y
F062069Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0182014_1000697910F006278GAGGMFRAEIRWLASGPTLKLEGKLVADWAEQARCLVTTDVLPKGLVVDLTEVSYIDSVGEQLLKWLASVGALFVAGNVYAIAVCDRLGLSPMQRISERRKRRHGNNEEGYSIRHSRPVEAV*
Ga0182014_1000697911F017965AGGAMSEKIGHRDALYLFACHLEWLTERNLAAYQELLAALDDPDGDIRRLAEYLLHRSSPRPERAATGIESW*
Ga0182014_100069795F062069N/AMIGQRNKGSVMTEDGTSIHVRIDDEGYTHITVIQWDENGREIVYREDETFQCSEPQF*
Ga0182014_100069799F001596AGGAGMSRFHSITEAVDARNHASPAEIVACFQDQRNVLSRLAFLITGDQAAAEQAVVHACEMTIQGNSPFRDWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHAEHLSQDDAEERAASLDLILAADAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHAMTWRQNGHAKPVEENHNASHAV*
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