Basic Information | |
---|---|
Taxon OID | 3300014492 Open in IMG/M |
Scaffold ID | Ga0182013_10001459 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 32538 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (61.90%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010977 | Metagenome / Metatranscriptome | 296 | Y |
F020294 | Metagenome | 224 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0182013_1000145917 | F020294 | AGGA | MHPELNAQSSEPFSPRRKLNGRHMLANPSLAADGFNIWWRKTAAQNMAMVAEASDLMRAHRLISSASQPRSRQAH* |
Ga0182013_100014593 | F010977 | N/A | MSISMPNRPTELDALLDRFRERRELVPFKARGLKGLAAELGAAYGIGLPWKEIWRALAECGYEGSYRQFWRMAVRLTGTTAQMPRRRKNLPPADEGKEFHQPKVRESGLSTESTVDKEKPAWQVQREEAMARLDREAELNRQRESQLKPTKVFKPSVFVGRSED* |
⦗Top⦘ |