NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182013_10028871

Scaffold Ga0182013_10028871


Overview

Basic Information
Taxon OID3300014492 Open in IMG/M
Scaffold IDGa0182013_10028871 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4707
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N

Sequences

Protein IDFamilyRBSSequence
Ga0182013_1002887111F003764GAGMQIQEDSTYVLDENPAALLTGAEIDAAALHRCLKIVRLWSQSSVLPRSRHDEMIAEERRIAKLYAATLFEIGCAFGIETADELKVRIEAACILDPWECPPAEQGLLFPIPRDSANAASPARARK*
Ga0182013_100288718F003389AGGMQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDAKDQVAKAEAFIEAEDFDGLDEWIHEEVIEPLNTYSVDQHKLDIPAASDPAPAVENKPITRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPQELSEPNSCDHFCDEEDSPLSSGAIDELCDRLNAGFRN*
Ga0182013_100288719F003942GGAGMLGRRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWETGKTLLNLFSPLDGNVLGFPHYLLHRDNISAVGPKLPDGTTAQPGMAEAIELQRQAGHSLYADHLSAMLYGTGPNPARS*
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