Basic Information | |
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Taxon OID | 3300014492 Open in IMG/M |
Scaffold ID | Ga0182013_10179885 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1296 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000451 | Metagenome / Metatranscriptome | 1124 | Y |
F024463 | Metagenome / Metatranscriptome | 205 | N |
F075570 | Metagenome / Metatranscriptome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0182013_101798851 | F075570 | GGCGG | MADQAERVILEAEDQVTPVVGQANAGLDSFEKKAES |
Ga0182013_101798852 | F000451 | GGCGG | MPRFQTVIRKARFVYSPYTATEMQGFAQVLADSIRARIQSGQNIYDQAAAPLKPGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEAMPGRRQTASQIAFYNNQRERQWGVSPRDRQAVLAVMLNYRPLVTLQEMRQGGAYFRGMRQFGFGQYINSIPMAA* |
Ga0182013_101798854 | F024463 | N/A | ASTSVVAARRSVETRAFLEPSGALYDKLHVSHDGYAGAVPIVHKSAAVSEVIGYLAIEGDDDPE* |
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