NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182016_10001416

Scaffold Ga0182016_10001416


Overview

Basic Information
Taxon OID3300014493 Open in IMG/M
Scaffold IDGa0182016_10001416 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29216
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (74.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0182016_1000141620F003389GGAMQITVWSVAADDNNGTYASVHETESAAYRRLIQLTVDSDNKNDVAKAEAFMEAEDFDGLDEWIHEEVIEALNTYSVEQHTLDVSACPSPAPTANERALSRRELASALHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLGPNEIDDLCEKLNMEFCT*
Ga0182016_1000141621F003942GGAGMLGHRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWETGKTLLTIFSPLDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGNGLNPARS*
Ga0182016_1000141623F003764GAGMQIQDDSPYLLDENPAALLAGAEIEAANLSRCLKIVRLWSQSSALPKSRHDEMAEEEQRLAHLYAAILFEIGSAFGLRAADELKVRIEAACILAPWECPPAEQGLLFPIPNGPATAASPATPGK*
Ga0182016_1000141624F004301N/AMEPSVNARNAKRQLDTLRSQLATAQVDLEDVNYNLSIVTMHQRASREGKIDANWWDAAMRFEMLDPGEEPVYRLGSYPVKVMRWIRHLLFTLNAERRDVLSAIADLEPKVAALSQIIGSAIQ*
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