Scaffold Ga0182016

Basic Information
Taxon OID	3300014493 Open in IMG/M
Scaffold ID	Ga0182016_10002541 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014493 Open in IMG/M

Scaffold ID

Ga0182016_10002541 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21390
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

21390

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (76.47%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015956	Metagenome / Metatranscriptome	250	Y
F019749	Metagenome	228	Y
F091257	Metagenome	107	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_100025412	F015956	GGA	LAEAAEEYTDWQVFTLWLRAVVEAAGNIPAMVAEEMESRTPQLLGRIRPAVEAAVKNGNGAGSRIWHDVSGWAETNVFIGAARAGWLDAVRYFSSMSLRSMRAWSHWEDIDRQWRAAAPQHFPTYQQWQCRVSAVARLSNPGSIAQQVLDSVRSVSEAEWSKLVNGFSDLMAFSLWLELVLDTEGPASRLVSKELADRYAGFKASHAIKSKAVVRELNQWALDRALGIADQERLLAALRFHVSHHPAYPAIRSYALHCHGVWAVEYPDHLPSFEEWREAADAYLEA*
Ga0182016_100025413	F019749	GGAGG	MHAPEEGQARLSSADDNRPNHVPKKKRGNLSATLDPLLAPRRPAGQPGRQVGVSRYEWTPETDKLLVDLCAKRGAATAKRIIGRKIQDGRQTATAPNEDSIRKAVEYRMAKMGISPEHKRMNPAMRETKRWTETQTSALLGALGADATIESIAARTGHSVKAVRAKIARLGYGIEEIHGFTVFTVNSLAALLRVTPRQIRRWKERGWLETKDRRITEECLRQFLRGHPNQIPFDCLQPEDQVFLIDLGFPSRQAATFKKNVREILDGIGRQRKPRRPVRRGDVTTMDHGEGDEGTESDDGSPFRIGTLG*
Ga0182016_100025415	F091257	AGGAG	MNDKQERGLPARRAEKRLVKMIGEAARRDCLNPERIDCPSSDAVNAVVVRRLSLPDFDNVVDHIATCAPCLDEYNRLRHRYRLRKAGAVVLACAGLLFLGIFWNHGPLKQHRPNEPTAKEVPAPVLAATLDYTNWTAERSEQSRPRPAETPHLTRASLDLNIKLPIGTEDGIYTVQFRSKSDELVAEAVGAAAWNGAAETLKIRTDLRNVPAGAYTVTIRAANSSLRYYAVVLE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182016_10002541

Overview

Ecosystem & Geography

Associated Families

Sequences