NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182016_10007345

Scaffold Ga0182016_10007345


Overview

Basic Information
Taxon OID3300014493 Open in IMG/M
Scaffold IDGa0182016_10007345 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11350
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (42.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F002448Metagenome / Metatranscriptome558Y
F010139Metagenome / Metatranscriptome308Y
F021908Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0182016_100073451F000451N/AMAFQAVVRKARFVYSPYTSQEMQGFAQVLADAIKKRIQSGQNIYDQSAAPLKPALAGRRGYPDYKSARGLQPKRDWTWTGHTLSCMRVLSGDDSKAVIGFLDEALAGRQKTANQVAFYNNYREKQWGVSPHDRTIVMSAMAART
Ga0182016_100073453F021908N/AMEACPVCDADWKALDVSHGPGCPKNLLEEALESPNGALVRRCFRILKAKDMGLTITLSDVTEEEFRGLELIDGSRQNLASLEDQGAKSFQELLLRKLSRR*
Ga0182016_100073457F010139AGGAMDHVFMESPQGDEIKEVEATAAALSPLMSQGWHQVPPPATGKTNISTEEAK*
Ga0182016_100073458F002448N/AVINPKLILAEWVTALQSLPNLVEALDGHAAQIQFYSENATVFGQPAQNNTRVALLSMPPGSIMVVWQGTKPARWGGALHFVHEFSLYLRAPEDLSVGYEDLFNSIVNDMPQGTTLPMLHTNIDPFCEPMDLYLPTAQRNTIVVSASGDTFEYFEIKASLIEATNP*
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