NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182016_10021399

Scaffold Ga0182016_10021399


Overview

Basic Information
Taxon OID3300014493 Open in IMG/M
Scaffold IDGa0182016_10021399 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5756
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033558Metagenome177Y
F039020Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0182016_100213992F033558GAGGMNEDETRPGLLIPSTLLRFIDRSLESERRATEAEIRRCENAIEAYARSEDLRHAASDAKIQKANEVLDYRLEEMNNFRAQINEERAEYLRREMYEREHSGLSDRVKTLEIVRGEQAGKATAYVSVVGCLLIVAQIVLHFWK*
Ga0182016_100213996F039020GGAMTGIAGAAAARAADAMLQTLGGTEAILLFAVAGLPPDGIAELGLVDPGVVQAPIAPVFVRELTTETNGPRRRIELLAGHAAMAEQVSQRNVACAEVLFETALGLLYGGVIFRIEGFVVERLDGVAYLYKVAAVA*
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