Basic Information | |
---|---|
Taxon OID | 3300014493 Open in IMG/M |
Scaffold ID | Ga0182016_10087225 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2252 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001473 | Metagenome / Metatranscriptome | 688 | Y |
F019638 | Metagenome / Metatranscriptome | 228 | N |
F025071 | Metagenome / Metatranscriptome | 203 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0182016_100872251 | F019638 | N/A | QPFAMQEGSGEIRNGLVTFSNLPQHPAVRTRKARVLRSREDRREFLAVCEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFLECAPVRPWESRPFQGAPVQ* |
Ga0182016_100872253 | F001473 | GGAG | MEPEYQTVSQMYERLLLMIRQRDDTGFRLAVTDAALQPRNPFEPANKRRPKPAVAIAISLFVVLALVFLYFSFQHKE* |
Ga0182016_100872255 | F025071 | GAGG | MIHHSDNPRGEMSSGEAGVVGAVLGFGLIALALYLVVARYHIRKEQLVEAALYLFIITAAIAVPVLRKFSGKDARRKRPPFVMPARR |
⦗Top⦘ |