NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182017_10201717

Scaffold Ga0182017_10201717


Overview

Basic Information
Taxon OID3300014494 Open in IMG/M
Scaffold IDGa0182017_10201717 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1271
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0182017_102017172F003764GAGMQIQDDSPYLQDENPAALLAGAQIEAAGLHRCLKIVRLWSQSSALPKSRHDEMIEEVERLANLYAATLLEIGSAFGLRAADELKVLIEAACILNDWECPPAEQGLLFPIPGDATTLTSLANERK*
Ga0182017_102017173F004301N/AMQFSLFNAQPQVATVGMEPSVNARNAKRQLDTLRNQLATAQADLEDVNYNLTIVTMHQRASREGKIDANWWDAAMRFGMLDLDEEPVYRLGSYPVKVMRWIRHLIFVLNAERRDVQSAIAELEPKVAALSQIIGSAIQ*
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