NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182017_10393117

Scaffold Ga0182017_10393117


Overview

Basic Information
Taxon OID3300014494 Open in IMG/M
Scaffold IDGa0182017_10393117 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)859
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F010139Metagenome / Metatranscriptome308Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0182017_103931171F070324AGGAGGMANINELMNGWGFGKQAAIGTANLVAAMWRHTNLNTKPWAK
Ga0182017_103931172F010139GAGMQSPQGELKEVDATAEALSPLMSTGWHQAPADHKPAVPAEEEK*
Ga0182017_103931173F002448GGAMINPKTLLAEWVTALQSLPNLVDALGGDGGQIQFYTENAIVFGQPTQNNIRLAILSMPPGSVMVAWHGSGPGRLGNALVFVHDFSLYLRAPEVADVGYEDLFNWIVNDIPAGGSIRMLHTQIDTNCEPMDFYLPSARRNTVVISADGATFEYFEVPVRLIESYNP*
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