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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014495 Open in IMG/M |
| Scaffold ID | Ga0182015_10000041 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 155807 |
| Total Scaffold Genes | 141 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 94 (66.67%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000214 | Metagenome / Metatranscriptome | 1570 | Y |
| F003631 | Metagenome / Metatranscriptome | 476 | Y |
| F004157 | Metagenome / Metatranscriptome | 450 | Y |
| F006426 | Metagenome / Metatranscriptome | 373 | Y |
| F009346 | Metagenome / Metatranscriptome | 319 | Y |
| F017174 | Metagenome / Metatranscriptome | 242 | Y |
| F077901 | Metagenome / Metatranscriptome | 117 | Y |
| F085937 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182015_10000041102 | F017174 | AGGAG | MYSWENPDDRVAIVHMNSELRHAQLELLSAHCATHQLRLRFSADDLARFGQRDVLRKSVQAASALSEYYSSLEKKIPDAEAAAAPRTQLTEPQILGAIARVSSYLQEQREHYFPSAAPLSPRQNAFMSPYFPAALLDRARIVELVGARLPNPPFYAEAVDLGFHNLPQIAHMASMTFLDVIVFNEKLTERSLFHALVHAVQFQLLGVERYADLFVRSFVNTKFHFSVPLEAHAFSLESRFAGQPADRFSVEDQVHLWVRNGRY* |
| Ga0182015_10000041135 | F077901 | GGA | MAYEVFKRTGARVETPTLSVVPDGRIVMNAATVRIVKERRITSVLLLWDPTNHRLALKAAQRGDKNSYAVSVAASSHSGSLRAKTFLSHIGWTSSKREKIPTEWNEKERMFEATLPLEHLKSERSSVKRSGAN* |
| Ga0182015_10000041136 | F085937 | AGGA | MPRRWKPPKEHRTDAEAVRRKRELAEKLAFAVEYGTEQEFVDAVKKFKPDVEKEELKAWIMRFRDARREKRGL* |
| Ga0182015_1000004130 | F006426 | GAGG | VPDDSSNPGSNPQPRGTTIIAAGLLLAALALVVLYTSRRAFLSPLALVVVAAIGVVALLLQLRLRPDLSSSLRASSARGPLWLNGLGVAFGVGAVFADILHLNGVFMLIAALGAVVSFALSGIIVLGALRKRR* |
| Ga0182015_1000004141 | F009346 | AGGAG | MSFEEALAVASRDEGFKATVYAMSTLLIRKGVYTQEEFQSFFVEWVEKELKRKKPDDARLRSE* |
| Ga0182015_1000004165 | F000214 | AGG | MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMNSDMVKPALATAVNGPQQPIRIPAPPVAVTAQPVRAAGWDDTAKRWP* |
| Ga0182015_1000004170 | F003631 | GAG | MELLLNLAWILLALPAYWLWRRDAGARLARRVTSLQCLLALGCVLVLLFPVISASDDLHAMRAEMEESSTSKRAVRQAGSDKNSAWVNRLQGPPLAVASAVWTVAPQVRLLEVSVVCLPPVARPCMVHAGRAPPSSLLG* |
| Ga0182015_1000004171 | F004157 | AGG | MSCVLLTGALVMGMNAAAVGQAAEGRTNAAPGATDKTAPDDKDKDDGLVIEPTELPGTYPQGAYQVNFQARGNYVPVLHWRVESGALPPGITLDDNGMLHGAARRAGEFQFVVSVRDGGQPQQAVQKGFTIKVVDAITVAWKVPAHVTANRIDGSVEVSNTTADDVDLTFDVKAVAENGRATEIGYQRFPLKKGTIGMTLPFGETLPHGGYVVYVNVVGEIAKRNAIYKQEMKTPAALQVVVGP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |