Scaffold Ga0182015

Basic Information
Taxon OID	3300014495 Open in IMG/M
Scaffold ID	Ga0182015_10000058 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	141705
Total Scaffold Genes	194 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	160 (82.47%)
Novel Protein Genes	28 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	23 (82.14%)
Associated Families	28

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F023510	Metagenome	209	N
F024018	Metagenome	207	N
F025900	Metagenome	199	N
F031336	Metagenome	182	N
F035603	Metagenome	171	N
F038954	Metagenome	164	N
F039920	Metagenome	162	N
F041558	Metagenome	159	N
F042700	Metagenome	157	N
F044872	Metagenome	153	N
F050080	Metagenome	145	N
F050093	Metagenome / Metatranscriptome	145	N
F050107	Metagenome	145	N
F053027	Metagenome	141	N
F055379	Metagenome	138	N
F056263	Metagenome	137	N
F056264	Metagenome	137	N
F062380	Metagenome	130	N
F064338	Metagenome	128	N
F066389	Metagenome	126	N
F068368	Metagenome	124	N
F071899	Metagenome	121	N
F071901	Metagenome	121	N
F085039	Metagenome	111	N
F093143	Metagenome	106	N
F098480	Metagenome	103	N
F102387	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100000581	F056264	GAG	MGSPVTISNPAPGCSYLNYPRAVLNTPHPVYGGNLAGFGVGDLPTQFESGLAVFTAITANATSGLIDVAANAIELDATFSDLHTSCTITVFLADGETVVATWNNVSTLNSGNLYAGFAEQRKLIGGGSLVFQVSN
Ga0182015_10000058106	F035603	N/A	MTELVVSARIMIEEAVDYVYMSRVGITCLNRLGELISFVLDPNEAPYTVVVQDCLVLPGLHLMVSHVFVDRYMKWAGLDEPFQVWRWHLDVYPPMGIVPVQYGVYGDSVLRKDRIYRSSFEPVGGPELTDPVLLGMQFAAKDIPTAACTCDLVAERQLYRRNSPFLPHPGNFDARLGILVDYESVLEQDKTPKQEWVM*
Ga0182015_10000058134	F102387	AGGA	MIYDVRVGALLDGSQEIYTIIQSVEASSAQDAAEQVVRGFEDGAEGHEEDWYDGDNDECVDWQFEGEHKVEIDPVVGVTQVVTVDHKATIKIITE*
Ga0182015_1000005814	F024018	AGGAG	LSAHPTTAIDIAKLLAADNVSTADRIWAVDFEAKMPAELITEEDLKCPDCGVVHDPSLENARVFADTVTVLGGPDAQVSVDRVREYVLNRELEAGLHMTDFVFTGVKLLAAAEVV*
Ga0182015_10000058157	F071901	AGGTGG	MGTFNVFSYLDPALVKEEMGDPYASKTPAVWPSEASAERVDKTLFNIVGKCHRASFMRMMGFSVTNPADATGAWKWLMGRAIESGLTDQAKLAGIYAANGVKHFIRDITLSLEFDVIAVDPVDKRGWILECKSYSGYYAKKEIETMNKPKLENLIQICLYILEARTGKRLKAMIQKSLDERKVLDKKVRDFKKNGEVFEHRNRSEADKKMVKSMSDGPIGGKLLYVDRDSASRKEFTIEIYQDFDGFHYPQVDGVPFKIFTMESVYSRYKTQQGYWFRARAQGAQNLAQKGILPPPSLKLVLCAQDVVDGDGFVQKTREDLIAESNYLTLLEDEVRLLPSSFWPPAEYEWSYSPVRVELLFEHGAIGKTKYNDYKKDKIKRLGDWQCSYCSVAGHCLKEARPELQYLITDLQGLLSDTSAEVEIG*
Ga0182015_1000005816	F041558	AGG	VKPTAKTESAAAPAVVAPQTPKFTAGDLVRKALQLRQQHTLNAPAATGEALGAPKGPKPTIVEFKVTLSDGTVLHATGKHADVMVRFSNECQEICQTQGLAAYNGPPLTHYTAEEWAARNE*
Ga0182015_10000058164	F053027	AGGA	MLLTERQIDLRLKCPMFDMEDRHGPSSYECAQKLLRWAVLDAFKGRLVPVATLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDCIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPGAIELIRYVHLMASTDYTVPGVYHLPLFRGEPWKMKNFDLPLVRKAVTSILDAVRNTDHPVPGSHCEDCIGKRCRSLAHA*
Ga0182015_10000058169	F066389	AGG	MPPTEELSLPVGAEITATDVPYGSSYTNGHLYGAHAMGNILSGDLQNPDSAPLTEAFDPRTGTTYHGFRFPGNVVQDPRIPVGTIAMINSNCHMVLMAPDGRTVECDVRDVMLNVDPARAMSERIALKAVEFGSGTIGGTMQMSPESHKGLMRAFGFTDEPKPVIVPQEDLFEDRTW*
Ga0182015_10000058171	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRTPFKPLEIQHLVSILEALAPTNSLTKDMKELHESMKHRFINLNLKNRPRLLPTGEWMVTLAWYKADIEEVLTLLLEAKSGKSQTIESLAEQQKEQGKDLFEV*
Ga0182015_10000058177	F055379	GGA	MGTWQTLLDVCPYIPIPLMAILFALGLWHEIVCSNRRIAADIKPPPIQDSTLYKIEPSKWSKTKVADNAIGYLT*
Ga0182015_10000058178	F050093	GGAG	MTEETTGVLEKELAGVNEQIVRLEKYKTALNAALRARLDLDGFINAQPQVYSPQTVTLTALTEGKDSPNARPNSLEMARVVLLNLDGEEKTPDEIRALIKKTYGIGPAKTLDQMLYKRASKGTMFYKTAEGRFGLLALRATTEEVRTPTTAVA*
Ga0182015_1000005818	F042700	N/A	MDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTRTDDRGWLNKLCEIRRCLRVPAEEVYRQGRCNGKGRFTDAPLAQHSVSCAGPAATR*
Ga0182015_1000005821	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAPEEFDPETSHTEVISLFDLIFGRH*
Ga0182015_1000005825	F023510	GGA	MVKPIDPWPAPPGPNSHIFFKVSAVNPNHYGISPTTFIVEAVNEEAATECVKRAIRMGILLPHGCDGALSPWPTYFQSNALRYLLDGMFIAEELGTLPTLRFFPDPCVRDEWLRYQLSWTARLVEDLQKWWSAVKARSFFTSWFGR*
Ga0182015_1000005829	F031336	AGGAG	VLNGDVIILSPPKDPSWFSDASQSLSLFFWEHSDLIPLLMAEVALAVLIFAGFFWWERRKNKQAFQVGELERMYSAEPIPWPR*
Ga0182015_1000005832	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPSAAMEKTLQAVLARPAKPKFHRVAPEVNHNSVRCIGLDKLKF*
Ga0182015_1000005833	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGDCMRIARREIDSLLSFSVLDRIAKYVWEHREQFLTLWTVYAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0182015_1000005834	F062380	GAGG	MPSDFNDSECNDFEKLLFADLGSTGTCKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*
Ga0182015_1000005835	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGMSVGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVESTADALASAA*
Ga0182015_1000005836	F025900	N/A	MSFCTLDLKLQLQEKCVPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAAETIRADIASLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTVGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAAEEAPAEQVNTDPFPDGEFGKEAA*
Ga0182015_1000005837	F056263	AGGAG	MAAVITAEVSTPWLQQAGLKIRSWHGTGMSTFNAWRQHRDQEALEKALARIIETANGHQAKGLPKGSPAYFALRDKATAKIDTFCKKWNVDRTVIEAEAPALREMYALTIPDKQAPASLKLLAAFLGGILSLVLIGAASGLVNVGHNWVMHLFTNFIH*
Ga0182015_1000005839	F005296	N/A	LWLLPSYEAGFWSALIAGKLRDRGKTRELLVYGRPARTCLPILDERLRKAAGTPTKSQAFVARWITTGLRWLANTRAIEYAILLGLKRVWPKGQTICTEVKLCL*
Ga0182015_1000005857	F038954	GGAGG	MGSFVFVVLVLGFIWIVRGLAKAEQRRQLARQAGFTEEEINRIDQKNLAIQTFLAGLIVGPTTFIGMIFLTCLLVWVLFPVGLLATLVLWSLYLKWLRSFYREN*
Ga0182015_1000005858	F093143	GGAG	MSASHATIAAGYVSMAEQELEQDLASTMKTILDRDPNIAHRALVFVLQDECLVTFEKADSHIKSHREV*
Ga0182015_1000005862	F085039	GAG	MFEIVPPEPVVVSDKLAEKILQFIGSFMHADCSSMAEALFAAVPELKLVDNALTTMETVYNDCLLTQQGISDLDGKNLAATMDNIQESFQALTGHECRPCDFNMDPGAGREPEDGEDDDEDAQQSVGEDGNQVAHPAED*
Ga0182015_1000005866	F068368	N/A	MNGETMQDEYALKNGINYRADGYAFCDRCGCNQIVNDRCLKCDVTPTEADRKLADEIRSRCYRTSAGRIPGCYDGRPESFDTERAACILAAMRVSGSKFVPVQPEPQAGVNTGCESRPGA
Ga0182015_1000005877	F098480	AGG	MAKATGAEIMEFYDHHWPEGYYHDDSQIEFHDQNPPPEATDDIWILEPETKYDLEQCGVLISEKDGEAIDFALAFNRWKRTRDVAILAVHVPKAREQEIRDYLKLQGCKVQ*
Ga0182015_100000589	F064338	GGAGG	MATPGLIPIPEDLALFPVPTENVNGLLATSEDLGLTVEEKQELDNYQSALRILGPAAGAVLMCPGNQENVADEDKCPYSSKCPLLRMHKAPADKMCPVERLIVEERFNAWCRELSTDPILAKESDRVAISDLCWIDLQMQRSLHILSKGDEARLTVTNPKDVHPETFLPISWEKVIHPNVELLVTLQTQRRMILKDWMLTPEQKWKREKAEGKGSGKDIASKQSARADKLRAIKSSNED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182015_10000058

Overview

Ecosystem & Geography

Associated Families

Sequences