Basic Information | |
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Taxon OID | 3300014495 Open in IMG/M |
Scaffold ID | Ga0182015_10000259 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 76200 |
Total Scaffold Genes | 77 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (53.25%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000249 | Metagenome / Metatranscriptome | 1459 | Y |
F001709 | Metagenome / Metatranscriptome | 648 | Y |
F019610 | Metagenome / Metatranscriptome | 228 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182015_1000025958 | F000249 | GGAGG | MKTLAWILAFPVLISVLGRAQSAPPASAPPESGAEQRMFFPRDMFWGWGQLDLAPPHNEIDPNLCAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGVLRRFMVFGAPSFLFGKNVPQTLYTWSPDAIGVEHSWGGAVYISRGFEFRVTQHFLFDRLGARDTNLGVADLGNNGPWGRYMTVGVRKYFGTRRW* |
Ga0182015_1000025959 | F001709 | GGAG | MPQEVSVSYQAIKSKVYRLIDALVVGEKSEADVQESIRRWWDLIHPADRPIAQKYLLAVLEHSYLAVDAIEEGLMEATDHESLRPSESPRTMRLVGRMLKQTARQGLSTSA* |
Ga0182015_1000025975 | F019610 | GAGG | MRAYLANLTPKTRALLTIPLIVIAYPIVTILIPALIRAAVPDVVRSVLSLI* |
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