NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182015_10006481

Scaffold Ga0182015_10006481


Overview

Basic Information
Taxon OID3300014495 Open in IMG/M
Scaffold IDGa0182015_10006481 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11730
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010410Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0182015_100064816F010410AGGAGMPSSKLKPQVNPKTFKGKFCTGFTIALLLIPAAFAVDGKEQNKDQQTYCKYLTEQAAAQRELLITPNAVVGVTQPNTGLPMQAVWGVSGSLANVRKGVLTMDVARKNCELYGASTSTQQDIQYALPNLEKQALQHRLGLIQEASANLDTLLATTTKMVDAENMTRPMAFALQTTKIKLDADRADTQTKVASLYAPPRSDRPLKELVTEKQGREVNEQKALDKLSRQNDWDVALSVGGHQQISPWVDSRGAYGEVSISYNLASHAINKHLDRAADAYDEWKKVQEGDVIGNADILKQQVTDGIAVQDGRLKALREEQKQIESNLQLVAAAETTAALDFRNQLTTAQLLLKIEIGDASFRLDRLKEFLEKNF*
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