NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182015_10007144

Scaffold Ga0182015_10007144


Overview

Basic Information
Taxon OID3300014495 Open in IMG/M
Scaffold IDGa0182015_10007144 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10977
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002337Metagenome / Metatranscriptome569Y
F021167Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0182015_1000714412F021167AGGAMTLKSALQDLRETTLAAISGLLAKLAYLGSLRRHEGGYQHWGMSLVHGEESSDRALKAAHSEVL
Ga0182015_100071449F002337GGAGMNLAIVLVIAAVLALSIILRLAVTQSLQAKRSANLAGAIRPIDIEAFRNLINPAEDEYLRRRLPPAQFRLVRRERLRAMAVYAQAAGRNAAVLVRVGEAALASGDPRVAEAAHQLVSDALLLRRNTTVALARIYLALAWPNSRFAAVRVVDRYEQVSGTAMLLGRLQNPAVPVRLSALS*
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