NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182011_10106990

Scaffold Ga0182011_10106990


Overview

Basic Information
Taxon OID3300014496 Open in IMG/M
Scaffold IDGa0182011_10106990 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1949
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F006683Metagenome / Metatranscriptome367Y
F015081Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0182011_101069901F006683GGAGGMSKPDQAVRQVNVKVSGITFESVRLRHDLGANDFDIVIDDPHVGRFALTPAVPDLELRDEDSDWRQVTLDELKKILADDELADAAEEPQASPERESFNRLVAEGEHIMNAEIALYRAGIPFLQLPSQQDKFCSSLFMVMSVPKARACLQRAGFQPKFDSETVLFD
Ga0182011_101069902F015081AGGCGGLHPYDSGEQEIGLEVIIEEQRRLARSPNLIERVVGSICISAILKKQLIGLPNSTISQLLTDHIWSQLNLLGPESVIVEIASERLIEKYETSLVCPECGAEFWRADE*
Ga0182011_101069903F004185GGAGGMSLKREFIRDGKRRIIGSVTTGYVGSFETIVRDEQSQIAGSTSERFNTTRDEHDSLVSINTADPGLLIGRKK*
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