NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182012_10112432

Scaffold Ga0182012_10112432


Overview

Basic Information
Taxon OID3300014499 Open in IMG/M
Scaffold IDGa0182012_10112432 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2023
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F023143Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0182012_101124322F023143AGGAGGMDWVFLESPTGEIKEVEATAASLTPLMVAGWRQVPAPAATGPKPAAPVEEKQ*
Ga0182012_101124323F003186N/AVINPKTILGEWVAALRSCPDLVTAIGGNPENIWAFMEGLADHNNLRLAILQMLPGSILVAWNGTTPRRLTGGALHFAHHFSIYLRAPELNSTATYADLFWLVVSAIPAGAPSWSSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQNNPGGE*
Ga0182012_101124324F002261N/AMSDWSSIDAAATAVMQQTFGEPVVYQPVESGAAVGSPLTIAAIRHAREREESGATAGFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTLRQPDAYGMTAVTLLKRT*
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