NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182012_10345207

Scaffold Ga0182012_10345207


Overview

Basic Information
Taxon OID3300014499 Open in IMG/M
Scaffold IDGa0182012_10345207 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)994
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003942Metagenome460N
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0182012_103452071F003942GGAGMQGRRLNPTIHRYEDVELIEVHSEYLECSFMVAKDEWESDKTRLTIFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIEIERQAGHTIYADHLSAMLYGTGTNPA
Ga0182012_103452072F042119GAGMETIIREVNPARLAWGTFDHAKSDYMNEGDIPASYSGDSIAMGQPVRKPFRMDGEMWVTIALSNKEARAYHLCPLRIFKGTTTAYRDKTGTAERAEEARNDPNGFYDRMIVKHGGQEFVLCGPEMQIVAGAHEDIPAPQVQLALF*
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