NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10001974

Scaffold Ga0182024_10001974


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10001974 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51721
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (76.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F003186Metagenome / Metatranscriptome502N
F021908Metagenome / Metatranscriptome216Y
F023143Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_1000197411F021908AGGLDGCPACGADWKAIDVSHGPGCPKNLLEEAMDTPNGALVRRCFRILNAKSIGLTITLADVTEEEFRVLELIEAERQEQMRAGGADDQISRQAAS*
Ga0182024_1000197413F000451GAGGMARFQTVIRHARFVYSPYTATEMQGFAQVLADSIRVRIQSGQNIYDQAAAPLKPGLPGRRGYPDYKAARGLNPVRDWTWSGHTLRCLKVLTANENRAAIGFLDEARSGRRLTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA*
Ga0182024_1000197415F000335GGTGGMPGNLVQSEPNGVMPASLCTAFTELREYAQLQNQYHDGTIQRSQLALTSRRTFRLSKRLSTSLLSTLYSFWVSQNAGLTPFAFYNPFDVASGQQIGSNHDPTGNNTEGRVTVVFRGNWAQSTDLARTNVQGLELVEST*
Ga0182024_100019747F003186N/AVINPKTILGEWVTALQSCPELVTAIGGDGANVRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*
Ga0182024_100019748F023143AGGAGMDGVFMQSPEGEMKEVEATAAALTPLMVAGWHQVPPPVATNQKPPTAAEEKK*
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Institute for Fundamental Biomedical Research
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