NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10002527

Scaffold Ga0182024_10002527


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10002527 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45183
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (69.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003387Metagenome / Metatranscriptome490Y
F006668Metagenome / Metatranscriptome367Y
F007329Metagenome / Metatranscriptome353Y
F069141Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_1000252720F003387AGGGGGMEKQLSVVGYWLGLICTVLALIFKGFNVLNIIPPFMAASGRNAISHTSFLHGAVLFFLLAIASSCRIAKS*
Ga0182024_100025273F007329GAGGMKKLHVAVLALSVGILGAPVLTHGKPHEMSQDENKPKLMNIKGTVHADGDKITFVADDSGKSWDVVNPEILKDHVGHHVELSAHMYVDKDQIRVMKLSML*
Ga0182024_100025276F069141N/AMEADLHAAIKMLQGQGHTVRPYIRYGTLWFEIDGNMLATRQEMLELADGVYSLQELAELFARRHAEEESRP*
Ga0182024_100025278F006668GGAGMTAQQHYNSLDSKQRWDLLLKIGETPEEARVLSQRDYGALGGWLKTRLKRYLKHPKP*
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