Basic Information | |
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Taxon OID | 3300014501 Open in IMG/M |
Scaffold ID | Ga0182024_10002924 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 41611 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (64.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F030498 | Metagenome / Metatranscriptome | 185 | Y |
F064932 | Metagenome / Metatranscriptome | 128 | Y |
F075734 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0182024_1000292428 | F075734 | AGGAG | MKKNGVGVAVLALFATLTHAEDYLSPTEERVRLSLGVVRVSNNTDLQIDSSAGVPGTPINAEDQFGLDKADYEAKIEAMVRVGERNRLRFDYFSLDRTGGLDVTQPIVFRDVILQPGDPLNSDLSIRTFGINYEYSFLHSDRYEVAATIGLNDTDISARARVQTQTRHVDQTEDHAGPIPTLGLDATYVVSKRFYFDARAQYFRVRIDDLDGSLGIYELDGLYRLRPNISFAVGYTSLRARLTSTQATQGGFFNFNSSGPEIFVRVAF* |
Ga0182024_1000292432 | F064932 | N/A | MESKLIALLAAEGSREATLLVRRGDGQFALARIDARVASAARLAARYAPAMTVRSMEASVAKR* |
Ga0182024_1000292441 | F030498 | AGGAG | MSHTTLLHNRFPSAFWTLRREATLNWLALGLLLAAWNASDNNAPDKDGAAGVHRRPESLRGYSYVSVRAANRIEVNR* |
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