NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10018747

Scaffold Ga0182024_10018747


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10018747 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12847
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F038518Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0182024_100187471F038518N/AAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIAELEPKVAALSQIIGNAIQ*
Ga0182024_100187472F003764GAGMQIQLDSPYVHDENPAALLAGAEIEVAGLHRCLKIVRLWSQSSAVPRLRREEIIEEEQRLASLYAAILQETGSAFGIDKAYELKVRIEAACILDDWECPPAEQGLLFPILNEPMTEASPATARK*
Ga0182024_100187474F003942GGAGMLGHRLNPTIHRYEDVELVEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNVSATGPKLPDGTTAQPGMAKAIEIQRQAGHTIYADHLSAMLYGTGLNPARS*
Ga0182024_100187475F003389GGAMQVTVWSVAADDDNGTYASVHETESAAYRRLIQSTVDADNKDEIAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKLDVPTAPASADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLGPGEIDELCERLNMGFCN*
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