NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10028879

Scaffold Ga0182024_10028879


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10028879 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9616
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003634Metagenome / Metatranscriptome476Y
F007046Metagenome / Metatranscriptome359Y
F057235Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_1002887912F003634N/ALLDILCASDSIVPTNSMNFLTSVFSSISLRWWVVLIISVLGIAAICIRAFETEDVRARRAERDKKKELRSLAERISSYAHTVHQRYPTGDVIVSERDLAEEFRKRPDVVITALNLLLSEQKVQKAPLRGYWKLHV*
Ga0182024_1002887913F057235AGGAGVVAAGASCPIPDCGALAVTYRPTEGVEHADSKAWEFTCPRCGIDFTVPEDELILQPVPKEWLVATGRVA*
Ga0182024_1002887918F007046N/AVIAVEGGAEARTCDGETIVVNLHGALIATAIELSTGMKISIHVYMTDKRAAARVVYIDPKNPLHCGIELEEPRNIWRVLLPPNDG
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