NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10045951

Scaffold Ga0182024_10045951


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10045951 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7037
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001950Metagenome / Metatranscriptome613Y
F007996Metagenome / Metatranscriptome341Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_100459512F007996AGGGGGMRKRVLFVVGSVLLLMTGYLAGTHSTTLASDYPVTHGVVPKSYGRLAAAIPDNIGTGLVFEDAEGVIRFVSVNGMKEGELARYDQTPVKGGIPKSYGHLVTAVVNHGQTGLVFEDAHGLIRFVTLTGVSEAELSRE*
Ga0182024_100459515F001950AGGAGMQTANHKSSRRVITTVLVSLFCAVSTLSVGQSDAFQPNPAADAGTIIVHAKFGGQIFGFDIDQNGTEGVLSEAKTLSNGNVLAAVETFDQTTGKILAVVTKTQTQDDFITLGVVGNSVGLVEHEHVISFLNVQRTFQVINPLSGNKITGKWTPPIGTKHLINQVSRTQGTSNAAVFAQDNSGNFIPYVFSSNVAANTFGPVIKIQDSFNFGSVPPPMAYNSVTNQAVLGGGDGCFGCLPVIGVADLSKGTFTEFTGIGFGFVNGIAVDSADNIACATTEDDASVEFYDLSTQTGFTVVLPNSGEQQIFSGADVEFDATHKLFFVAQPVSSSSSTGSTIYVYNTAGVLQETLNGFSFSNASNVIAMHIALKPSTRSGFVDGPNAGVSEIQSFTY*
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