NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10252060

Scaffold Ga0182024_10252060


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10252060 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2366
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0182024_102520602F007233GGAGMANRKQREHQRQVNQDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTITLDTRLTGKLELFDCKTGDQRLVRKIGLLPDDSPVWRPTE*
Ga0182024_102520603F033134GGAMKQEPGSTQLITFRSLHIEVLGPGELGNIPLANGCVAEFLHAVEHDVRNLLRERAEVSPSLE*
Ga0182024_102520604F037842AGGAGGLKHQPVKARGEGVEYPALSGKVIRQVRFVNDDDYTALTIEFNDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRELKTRPVMRRVARK*
Ga0182024_102520606F044617AGGMGRAKEPAMSTSPTPSRQRPTVTAITAEERKKLDERIRDKHQKLRNKYPEIYGKVVDWIHHSVEDGTLYICIRFQDKTDFALEFSQQIVRVGTELCDSATDDFDVIRNYYQEQPE*
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