NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10641161

Scaffold Ga0182024_10641161


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10641161 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1322
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F019896Metagenome / Metatranscriptome227Y
F025071Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0182024_106411611F019896N/AALQNSQLGIDVASRLRADDAPIPLKITQSEPGIAELAPGEARLGVLALQLPPVKPDAKKAQPTVLQIVFPVDRSGSLTATLVL*
Ga0182024_106411612F001473GGAGMEPEYQTVSQMHERLLLMIRQRDDTGFRLAVTDAALQPQNPFEPANKRRPKPAVAIAISLFVVLALVFLYFSFQHKG*
Ga0182024_106411614F025071GAGGMIHQSENPRREMSSGEAGVVGAVLGFGLIALALYLVVARYHIRKVQLVEAALYLFIITAAIAVPVLRKFSGRDARRKRPPFVMPARRDERAIEAAWNQSAVLLGYDMDEK
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