Scaffold Ga0182024_10791199

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182024_10791199

Scaffold Ga0182024_10791199

Overview

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_10791199 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1157
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014428	Metagenome / Metatranscriptome	263	Y
F062010	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_107911991	F014428	AGG	MSALILKYRSGEEIRKGDRVLFHGNAAEIELVALDPNDPDPEIAWHIKESGGGVMILDPAVSGRTFIEKDSLEDYEDLEFVSRVQT*
Ga0182024_107911992	F062010	N/A	LTKGKPNARAYILLAMAEVTYHAVVWIGVVGVVPQQGCELLAPQDGAFINFLTLASSESEYRAKVSGALSSYRLDPMEFEDVRPFSESDNPSQEILSIAAELEESRNPKHVRYATFHTYPRVM*

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