Basic Information | |
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Taxon OID | 3300014502 Open in IMG/M |
Scaffold ID | Ga0182021_10004524 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16356 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (80.95%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000065 | Metagenome / Metatranscriptome | 2788 | Y |
F000272 | Metagenome / Metatranscriptome | 1408 | Y |
F044216 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182021_1000452410 | F000065 | GGA | MSDITSKPVPKLHRAPQPPLSYPGATPDADRAKKPRLAEPSATGPDLNPGDRVEGLGDFGKPTGEFGTVEQSNEDDAIVKWDDDGRVRLHQPWLKKV* |
Ga0182021_100045246 | F000272 | AGGAGG | MSQTVLERTTEHIAESAHEASRATSAVVDATKNVAGAVRDAAKQGGDAAEEFLSDTTQRIQRHPILTVAASFAVGFTAGALLGRMMKRR* |
Ga0182021_100045247 | F044216 | N/A | MDKYLCLRSLPVLALSLMFAGSGFGQNAPQKKTLVVNGRTADAAVVQIDGHSYVDVDALARIMNAAVRVEPGRVILTVPAAEAGAKPERSTPGLSKDFAKASISQLAEMREWKAAIASVIRSGVAAGNWLGPVLHDHRARAEAALSQTSLAAKTESDQKALQLLKNELTNLGEWDSNTQATIHSLNAEQSVNPAATQNDPLLAKISECGNFLNGMLVDGEFADSPSCH* |
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