NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182021_10427508

Scaffold Ga0182021_10427508


Overview

Basic Information
Taxon OID3300014502 Open in IMG/M
Scaffold IDGa0182021_10427508 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1573
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003300Metagenome495Y
F021887Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0182021_104275081F021887N/AMRRAPVRPEAAPTELGAWRAARHDPRPALPLAALVAEYTATFGSGWSPRTRAKHAGDYARFLAWLTGQGIPATTAALDFATLIGYVEFLRSRPRVHGVWRGAPDALARTLATGPVQTLSANTVNAYVRPLRSLAIWLVDEGLLALNPFRRSRRRAAQNPLLPSEETPTKSATLADLRALERGCAGDAPMDLRDRA
Ga0182021_104275082F003300AGGAGMMLSDEDFRDALRDVLARSGRSMRGLSAAMGRDPGYVAALLDPDRPSRARPTPADLLAASDATGLRFVELLEQLWKIDPGRLAQELGGLGVAGPLAASLARLDDIERASVADFAAFLAARANTARRVPRR*
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