NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134410_100003

Scaffold Ga0134410_100003


Overview

Basic Information
Taxon OID3300014546 Open in IMG/M
Scaffold IDGa0134410_100003 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from obese patients in Germany - AS60_18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hohenheim
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528067
Total Scaffold Genes521 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)382 (73.32%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092228Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0134410_1000032F092228AGGAGGMKKKCTLVLISVLTVECIVSAYLLFFYNPSFNMVYDSDTDLYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISGGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNSDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDEMLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS*
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