NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134386_100406

Scaffold Ga0134386_100406


Overview

Basic Information
Taxon OID3300014559 Open in IMG/M
Scaffold IDGa0134386_100406 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from obese patients in Germany - AS64_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hohenheim
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25116
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (32.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076653Metagenome118N
F083451Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0134386_10040614F083451N/AMSRKDIRKLVEKSNECYSKMDFVGAMKYRKQIKDIIDKESRIMLTRSESLIELMNGSGDEYKFKMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGNNIREGYDMFKEEAEMVNETDRSKIEEFNKKLDHDQM*
Ga0134386_10040623F076653N/AMDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKHMFEDQPGIYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRSGGELFGANLACMVCDRRDIDWGALRLWLDKYDDPTDKGMVNSPIQFMYLYLHYRNNTYKYEGNYIPNRIKR*
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