NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134372_1001323

Scaffold Ga0134372_1001323


Overview

Basic Information
Taxon OID3300014566 Open in IMG/M
Scaffold IDGa0134372_1001323 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from obese patients in Germany - AS58_18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hohenheim
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9405
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091068Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0134372_10013232F091068AGGAGGMNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDDLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE*
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