NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181536_10010378

Scaffold Ga0181536_10010378


Overview

Basic Information
Taxon OID3300014638 Open in IMG/M
Scaffold IDGa0181536_10010378 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8660
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0181536_100103782F004301GGAMAAMQFSLFNTQPVAATIGMEPSVNARNAKRQLDTLRHQLATAQADLEDVNYNLSIVTMHQRASREGKIDANWWDAAMRFGMLDPCEEPVYRLGSYPVKVLRWTRHLLFTLNAERRDVLSAIADLEPKVAALSQIIGSAIQ*
Ga0181536_100103783F003764GAGMQIQPDSPYVLDENPAALLAGAEIEAANLSRCLKIVRLWSQSSALPTSRHDEMVEEEQRLASLYAAILFEVGSAFGLRAADELKVRIDAACILDDCECPPAEQGLLFPIPNDPPTAASPARARK*
Ga0181536_100103784F042119GAGMETIIREVNPARLAWGTFDHAKNDYVSEGDIPASYSGDSISMGQPVRKPFRMDGEMWVAIGLSNAGARAYRLCPLRVFNGNPTTYRDKTGTEECAEVARNDPNGFYDRMTVKHGGQQFVLCGPEVQFVAGQQEDVPTPQVQLALF*
Ga0181536_100103786F003389GGAMQITVWSVAADDNNGTYASVHETESAAYRRLIQLTVDSCNLDDVAKAEAFMEAEDFDGLDEWIHEEVIEPLNTYSVEQQSLDLSALPAPAPTANERALSRRELASVLHGLRLMQEQWEPQMHGCASIGLHDPLELSEPNSCDHFCDEEDSPLGPNEIDDLCEKLNMEFCT*
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Institute for Fundamental Biomedical Research
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