NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181536_10081780

Scaffold Ga0181536_10081780


Overview

Basic Information
Taxon OID3300014638 Open in IMG/M
Scaffold IDGa0181536_10081780 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1913
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0181536_100817802F003764GAGMQIQLDSPYIQDENPAALLAGAEIEAGGLHRCLKIVRLWSQSNALPQSRHDEMIEEEQRLAKLYAAILFEIGSAFSIEQADELKGRIESACILDDWECPPAEQGLLFPIPNDPTTEASPATARK*
Ga0181536_100817803F004301GGAGMTAMQFSLFDARPAAATVDMEPSVNARNAKRQLDTLRHQLATAQADLEDVDYNLSIVAMHQQASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDILSAIADLEPKVAALSQIIGNAIQ*
Ga0181536_100817804F017951GGAGMAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANDKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGHDILARADVRALLSTQPHPNSFFAAKGKTMADYCEFLLHNSPRGTVANMVGKLREFAAESIQ*
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