Scaffold Ga0134488_100220

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134488_100220

Scaffold Ga0134488_100220

Overview

Basic Information
Taxon OID	3300014651 Open in IMG/M
Scaffold ID	Ga0134488_100220 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Washington
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6057
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Source Dataset Sampling Location
Location Name	USA: University of Washington
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089053	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134488_1002203	F089053	N/A	MEGARPDKFAFSVKLERVVDGCRPIKGCIRKWIYGSANGQPELSTAKEANVKNVEVSL*

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