NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181525_10050851

Scaffold Ga0181525_10050851


Overview

Basic Information
Taxon OID3300014654 Open in IMG/M
Scaffold IDGa0181525_10050851 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2368
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013663Metagenome / Metatranscriptome269Y
F014996Metagenome / Metatranscriptome258Y
F037832Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0181525_100508512F013663GGCGGMNTRPDRDGDEQLRLLDTAGEEAARYWRDEVARQFAADHWTPLAQQARAYLEALRALMDMLENAERDTDF*
Ga0181525_100508513F014996N/ALKGFHEALVRFRYAQRAVADRGDDEIEMTRASLAAKASHWQAQLEQRQAELDACRAGSRDKEGVADCSAYAWAVEQAGERLEHVRRWQQRVDTEASEFGGTASAFLDLLENDVPRAESQLLALIASLEAARRVQAGGGLPV*
Ga0181525_100508515F037832GGAGMTTQERIVEPVMAPSPTPPSVSPYLSLRQVVRPAIFAHFLLAEDQERAGHLAAECEDLLFLTRELLKAAGLSRLLGAEPAGPASAQEDSGDRQEQLLGAYAEAGLLWAKVVGSTMALAMALLDRGDWDGVRRLASFLADAGEDSTAAELKIQLGKAVWGTYHDQLQGISNAMRPPAIGEAIDALRAVLREVPEDVPDRNREVNRFLAPLAASVHALMREQEMDIPYSSRVEHIAVGGVARYPDIVKLSLDEIAAEFEASASGLVINKQENRHVRGYQRS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.