NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181522_10121378

Scaffold Ga0181522_10121378


Overview

Basic Information
Taxon OID3300014657 Open in IMG/M
Scaffold IDGa0181522_10121378 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1518
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097840Metagenome104Y
F103958Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181522_101213781F103958GGAGGMATLALNSRVQSLVTEYGVFWQFWPQFEQTHGERRLVGFEVELIGSHTSDLNHVDPACPRCRNVRAVLLSIANLVPADLALDVNS
Ga0181522_101213782F097840N/AMLAHAPSIQSFAALCLWRAKCDDTAGCTNCYANRCCAEAQSDEGVEMYSTTSLNGVPIIQRGGRNILGVLDQNWDFANEICDLLNSLDDDPHIFLTEHDRKWLKAMDRAFRKVQHA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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