NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135354_140618

Scaffold Ga0135354_140618


Overview

Basic Information
Taxon OID3300014706 Open in IMG/M
Scaffold IDGa0135354_140618 Open in IMG/M
Source Dataset NameHuman colon tissue microbial communities from Howard University Cancer Center, USA - CC0995
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHiThru Analytics LLC
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)516
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Unclassified → Human Colon Tissue → Human Fecal And Colon Tissue Microbial Communities From Howard University Cancer Center, Usa

Source Dataset Sampling Location
Location NameUSA: Washington, D.C
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0135354_1406181F026592N/ANSISCCLRTASPQGIAALAAQGGVATLTERSDATFSVEQFSSADRE*
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Institute for Fundamental Biomedical Research
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