NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157377_10000116

Scaffold Ga0157377_10000116


Overview

Basic Information
Taxon OID3300014745 Open in IMG/M
Scaffold IDGa0157377_10000116 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54885
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (45.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F013826Metagenome / Metatranscriptome268Y
F036379Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0157377_1000011616F036379GAGMMELDVYTDMMSVDVFTEQRLPLQERVVDKLADIMFASDMILDMLRHDREIGHLSSVEPSVRRVYDSVNELMKQLTD*
Ga0157377_1000011655F002324GGAGGMGEIKLFQICYEGELTAEVSHAMRRLGAEPNFDQSWYVWLSDERHAAPLVRWLRSQVDAEARLLVACSQFTTSRDFLLIRHSLTPDADYSELHRAIERLGVVVELPFESTFVVQSEDRTDVQTLGRALGELCPDEALMVTGVSHDWAYCDAGVSRMCVAAAADALQFRTF*
Ga0157377_1000011657F013826N/AMAVCWRCPECSEVSCEVDASAIGNPVACDHCGRPFPPQDTLCAVCDAPNPWSRRDSVHFLCRECGTTQTYHYSRAS*
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